HsaEX0027033 @ hg38
Exon Skipping
Gene
ENSG00000136895 | GARNL3
Description
GTPase activating Rap/RanGAP domain like 3 [Source:HGNC Symbol;Acc:HGNC:25425]
Coordinates
chr9:127385027-127389119:+
Coord C1 exon
chr9:127385027-127385145
Coord A exon
chr9:127387193-127387331
Coord C2 exon
chr9:127388904-127389119
Length
139 bp
Sequences
Splice sites
3' ss Seq
TGCTCTCTCTTCCTTTCTAGTCG
3' ss Score
10.88
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
Exon sequences
Seq C1 exon
TCTGTGCTTTCCCGTATCTCCTGGCCTTCACCACCGACTCCATGGAGATCCGCCTGGTGGTGAACGGGAACCTGGTCCACACTGCAGTCGTGCCGCAGCTGCAGCTGGTGGCCTCCAGG
Seq A exon
TCGGATATATACTTCACAGCAACTGCAGCTGTGAATGAGGTCTCATCTGGAGGCAGCTCCAAGGGGGCCAGTGCCCGAAATTCTCCTCAGACACCCCCGGGCCGAGATACTCCAGTATTTCCTTCTTCCCTGGGGGAAG
Seq C2 exon
GTGAAATTCAATCAAAAAATCTGTACAAGATTCCACTTAGAAACCTCGTGGGCAGAAGCATCGAACGACCTCTGAAGTCACCCTTAGTCTCCAAGGTCATCACCCCACCCACTCCCATCAGTGTGGGCCTTGCTGCCATTCCAGTCACGCACTCCTTGTCCCTGTCTCGCATGGAGATCAAAGAAATAGCAAGCAGGACCCGCAGGGAACTACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136895_MULTIEX1-9/9=7-C2
Average complexity
ME(8-9[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.574 C2=0.365
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(12.8=100)
A:
PF0078017=CNH=PD(0.1=0.0)
C2:
PF0078017=CNH=PD(0.1=0.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACCGACTCCATGGAGATC
R:
AAGGAGTGCGTGACTGGAATG
Band lengths:
247-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development