GgaEX1026104 @ galGal3
Exon Skipping
Gene
ENSGALG00000000847 | GARNL3
Description
NA
Coordinates
chr17:11170497-11172494:+
Coord C1 exon
chr17:11170497-11170615
Coord A exon
chr17:11171041-11171176
Coord C2 exon
chr17:11172285-11172494
Length
136 bp
Sequences
Splice sites
3' ss Seq
TGAGTTCTTTGCCATTTCAGTCG
3' ss Score
5.69
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
TCTGTGCTTTCCCTTATATACTTGCCTTCACTACTGATTCCATTGAGATCCGTTTAGTGGTGAATGGAAACTTAGTCCACACAGCAGTTGTGCCTGAGCTTCAACTTGTCGCATCAAGG
Seq A exon
TCGGATATTTATTTTAAAGCTACTGCTGCAGTAAGTGGATCATCTCATAGCAGTTCTAAGGAAATGAGTTCAAGGAGTTCACCTCAAACACCTACAGCTTATGACATGCTGGAATGTTCTCTTTCTTCTTCAGAAG
Seq C2 exon
GTGAAGTTGCATGTAAAAACTTGTATAAAATTCCTCTTAGTAATCTGGTTGGGCGAAGCATTGAACGACCTCTGAAGTCACCTTTGACTCCTAAAGTAGTCACTACTCCAACATCCAGTGGCATTACCTCTCTTCCTGTTACTCACTCACTATCCTTATCTCGCATGGAAATTAAAGAAATTGCAAACAGAACGCGTAAAGAATTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847-'36-39,'36-36,37-39=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.264 C2=0.107
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(12.9=100)
A:
PF0078017=CNH=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTGTGCCTGAGCTTCAA
R:
CCAGCAATTCTTTACGCGTTCTG
Band lengths:
246-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]