DreEX6011856 @ danRer10
Exon Skipping
Gene
ENSDARG00000060631 | garnl3
Description
GTPase activating Rap/RanGAP domain-like 3 (garnl3), mRNA [Source:RefSeq mRNA;Acc:NM_001128527]
Coordinates
chr5:32760517-32769341:-
Coord C1 exon
chr5:32769223-32769341
Coord A exon
chr5:32767733-32767868
Coord C2 exon
chr5:32760517-32760735
Length
136 bp
Sequences
Splice sites
3' ss Seq
TCCTCTCTTTGTTTCTGTAGTCT
3' ss Score
8.71
5' ss Seq
ATGGTATGC
5' ss Score
7.14
Exon sequences
Seq C1 exon
TGTGTGCATTCCCATATATACTCGCATTCACCACAGACTCCATAGAGATCCGGCTAGTCGTTAATGGAAACCTAGTTTATACAGCTGTTGTTCCAGAATTGCAGTTGACTGCATCAAGA
Seq A exon
TCTGATATCTATTTCATCTCCTCAGCGCCTATAAACTCTGCCTCTAACTGTAGCTCCAGAGACACTAGTTCCCAGAGTTCCCCTCAGACACCCACCGGCTATGAGATGCCTGTCTTCCCTTCACCGCTTGGAGATG
Seq C2 exon
GTGAAACTCAATCAAAACACATCTATAAGATCCCTCTGAGTAACCTAGTTGGAAGGAGCATAGAAAGGCCCCTCAAGTCTCCTCTGGTCAATAAAGTGCTCACGGCACCGGCCCCCAGCATGACCGGGCCTGCGCCCATGATCGGCAGCACCACCTCCCTCTCGCTGTCTCGCATGGAGATCAAAGAAATTGCCAGCCGCACACGAAAAGAGCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060631-'28-37,'28-32,29-37=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.533 C2=0.574
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(12.7=100)
A:
PF0078017=CNH=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGCATTCACCACAGACTCC
R:
GTGGTGCTGCCGATCATGG
Band lengths:
253-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]