MmuEX6100688 @ mm10
Exon Skipping
Gene
ENSMUSG00000038860 | Garnl3
Description
GTPase activating RANGAP domain-like 3 [Source:MGI Symbol;Acc:MGI:2139309]
Coordinates
chr2:32990564-32995165:-
Coord C1 exon
chr2:32995047-32995165
Coord A exon
chr2:32992123-32992261
Coord C2 exon
chr2:32990564-32990779
Length
139 bp
Sequences
Splice sites
3' ss Seq
CGCTTCCTCTTTCTTTCCAGTCA
3' ss Score
9.84
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
TCTGCGCCTTCCCATACCTCCTGGCCTTTACTACCGACTCCATGGAGATCCGCCTGGTGGTGAATGGGAACCTGGTCCACACGGCAGTTGTGCCACAGCTGCAGCTCGTGGCCTCCAGG
Seq A exon
TCAGATATATACTTCACAGCAGCCACGACTGTGCATGAAGGCTCATCTGGAGGCAGCTCAAAGGGAGCCAGTGCCCACACGTCTCCTCAGACACCACCAGCCCGGGACACTCCACTGTTTCCTTCTTCCCTGGGGGAAG
Seq C2 exon
GTGAAATTCAGTCTAAAAATCTGTACAAGATTCCACTTAGAAACCTTGTGGGCAGAAGCATCGAGCGACCTCTGAAATCACCCTTAGTCTCCAAGGTCATCACCCCGCCCACCTCCATCGGCCTTGGAGTCGCTGCCATTCCTGTCACGCATTCCTTGTCCCTCTCCCGCATGGAAATTAAAGAGATTGCAAGCAGGACCCGCAGGGAACTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038860-'56-62,'56-59,57-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.596 C2=0.274
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(12.7=100)
A:
PF0078017=CNH=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCGACTCCATGGAGATCCG
R:
GAGAGGGACAAGGAATGCGTG
Band lengths:
254-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types