GgaEX1026104 @ galGal4
Exon Skipping
Gene
ENSGALG00000000847 | GARNL3
Description
GTPase-activating Rap/Ran-GAP domain-like protein 3 [Source:RefSeq peptide;Acc:NP_001025847]
Coordinates
chr17:10439954-10441951:+
Coord C1 exon
chr17:10439954-10440072
Coord A exon
chr17:10440498-10440633
Coord C2 exon
chr17:10441742-10441951
Length
136 bp
Sequences
Splice sites
3' ss Seq
TGAGTTCTTTGCCATTTCAGTCG
3' ss Score
5.69
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
TCTGTGCTTTCCCTTATATACTTGCCTTCACTACTGATTCCATTGAGATCCGTTTAGTGGTGAATGGAAACTTAGTCCACACAGCAGTTGTGCCTGAGCTTCAACTTGTCGCATCAAGG
Seq A exon
TCGGATATTTATTTTAAAGCTACTGCTGCAGTAAGTGGATCATCTCATAGCAGTTCTAAGGAAATGAGTTCAAGGAGTTCACCTCAAACACCTACAGCTTATGACATGCTGGAATGTTCTCTTTCTTCTTCAGAAG
Seq C2 exon
GTGAAGTTGCATGTAAAAACTTGTATAAAATTCCTCTTAGTAATCTGGTTGGGCGAAGCATTGAACGACCTCTGAAGTCACCTTTGACTCCTAAAGTAGTCACTACTCCAACATCCAGTGGCATTACCTCTCTTCCTGTTACTCACTCACTATCCTTATCTCGCATGGAAATTAAAGAAATTGCAAACAGAACGCGTAAAGAATTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847-'45-53,'45-50,46-53
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.315 C2=0.293
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(12.9=100)
A:
PF0078017=CNH=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTGTGCCTGAGCTTCAA
R:
CCAGCAATTCTTTACGCGTTCTG
Band lengths:
246-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]