HsaEX0027033 @ hg19
Exon Skipping
Gene
ENSG00000136895 | GARNL3
Description
GTPase activating Rap/RanGAP domain-like 3 [Source:HGNC Symbol;Acc:25425]
Coordinates
chr9:130147306-130151398:+
Coord C1 exon
chr9:130147306-130147424
Coord A exon
chr9:130149472-130149610
Coord C2 exon
chr9:130151183-130151398
Length
139 bp
Sequences
Splice sites
3' ss Seq
TGCTCTCTCTTCCTTTCTAGTCG
3' ss Score
10.88
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
Exon sequences
Seq C1 exon
TCTGTGCTTTCCCGTATCTCCTGGCCTTCACCACCGACTCCATGGAGATCCGCCTGGTGGTGAACGGGAACCTGGTCCACACTGCAGTCGTGCCGCAGCTGCAGCTGGTGGCCTCCAGG
Seq A exon
TCGGATATATACTTCACAGCAACTGCAGCTGTGAATGAGGTCTCATCTGGAGGCAGCTCCAAGGGGGCCAGTGCCCGAAATTCTCCTCAGACACCCCCGGGCCGAGATACTCCAGTATTTCCTTCTTCCCTGGGGGAAG
Seq C2 exon
GTGAAATTCAATCAAAAAATCTGTACAAGATTCCACTTAGAAACCTCGTGGGCAGAAGCATCGAACGACCTCTGAAGTCACCCTTAGTCTCCAAGGTCATCACCCCACCCACTCCCATCAGTGTGGGCCTTGCTGCCATTCCAGTCACGCACTCCTTGTCCCTGTCTCGCATGGAGATCAAAGAAATAGCAAGCAGGACCCGCAGGGAACTACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136895-'51-56,'51-54,52-56
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.574 C2=0.320
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(12.8=100)
A:
PF0078017=CNH=PD(0.1=0.0)
C2:
PF0078017=CNH=PD(0.1=0.0)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACCGACTCCATGGAGATC
R:
AAGGAGTGCGTGACTGGAATG
Band lengths:
247-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)