RnoEX0037763 @ rn6
Exon Skipping
Gene
ENSRNOG00000057044 | Garnl3
Description
GTPase activating Rap/RanGAP domain-like 3 [Source:RGD Symbol;Acc:1564019]
Coordinates
chr3:12040851-12053737:-
Coord C1 exon
chr3:12053671-12053737
Coord A exon
chr3:12043498-12043636
Coord C2 exon
chr3:12040851-12040977
Length
139 bp
Sequences
Splice sites
3' ss Seq
CACTTCCTCTTCCTTTCCAGTCA
3' ss Score
9.49
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTCAATTTCGTTGCAGCTGTTGATGTGTATGAGGACGGAGAAGCCGGCCTGCTCCTCTGCTACAACT
Seq A exon
TCAGATATATACTTCACAGCAGCCACAACTGTGCATGAGGGCTCATCTGGAGGCAGCTCAAAGGGGGCCAGTGCACACACATCTCCTCAGACACCACCGGCCCGGGACACTCCACTGTTTCCTTCTTCCCTGGGGGAAG
Seq C2 exon
GCCTCTCTGATGATGGTGGGCCCAAGTCAGAAGGAGCACCAAGGGCTAAATCAAAAACCCGGAAGCGGTTGGAAGAAAGCCAAGGAAGCCCCAAGCCAGAGACTATGAGGTCAGCTAGCAGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057044_MULTIEX1-3/4=C1-C2
Average complexity
C3*
Mappability confidence:
75%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.596 C2=1.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(7.2=100)
A:
PF0078017=CNH=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAATTTCGTTGCAGCTGTTGA
R:
CTGTCACTGCTAGCTGACCTC
Band lengths:
194-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]