HsaEX0027036 @ hg38
Exon Skipping
Gene
ENSG00000136895 | GARNL3
Description
GTPase activating Rap/RanGAP domain like 3 [Source:HGNC Symbol;Acc:HGNC:25425]
Coordinates
chr9:127383438-127387331:+
Coord C1 exon
chr9:127383438-127383545
Coord A exon
chr9:127385027-127385145
Coord C2 exon
chr9:127387193-127387331
Length
119 bp
Sequences
Splice sites
3' ss Seq
ACACTCCCGTTCCCTTGCAGTCT
3' ss Score
9.8
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
ACAGTTGCATCTATAAAAAGGTTTGCCCCTTTAATGGTGGCTCTTTTTTGGTTCAACCTTCTGCGTCAGATTTCCAGTTCTGTTGGAACCAGGCTCCCTATGCAATTG
Seq A exon
TCTGTGCTTTCCCGTATCTCCTGGCCTTCACCACCGACTCCATGGAGATCCGCCTGGTGGTGAACGGGAACCTGGTCCACACTGCAGTCGTGCCGCAGCTGCAGCTGGTGGCCTCCAGG
Seq C2 exon
TCGGATATATACTTCACAGCAACTGCAGCTGTGAATGAGGTCTCATCTGGAGGCAGCTCCAAGGGGGCCAGTGCCCGAAATTCTCCTCAGACACCCCCGGGCCGAGATACTCCAGTATTTCCTTCTTCCCTGGGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136895_MULTIEX1-7/9=6-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.574
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(11.8=100)
A:
PF0078017=CNH=FE(12.8=100)
C2:
PF0078017=CNH=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTGCATCTATAAAAAGGTTTGCC
R:
CCCCAGGGAAGAAGGAAATACTG
Band lengths:
242-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development