RnoEX6016512 @ rn6
Exon Skipping
Gene
ENSRNOG00000057044 | Garnl3
Description
GTPase activating Rap/RanGAP domain-like 3 [Source:RGD Symbol;Acc:1564019]
Coordinates
chr3:12043498-12048014:-
Coord C1 exon
chr3:12047907-12048014
Coord A exon
chr3:12046352-12046470
Coord C2 exon
chr3:12043498-12043636
Length
119 bp
Sequences
Splice sites
3' ss Seq
CACATCTGTTTCCCTTGCAGTCT
3' ss Score
10.62
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
ACAGTTGCATCTATAAAAAGGTTTGCCCCTTTAACGGTGGCTCTTTTTTGCTTCAACCCTCGGCATCGGATTTCCAGTTCTGTTGGAACCAGGCTCCATATGCAATTG
Seq A exon
TCTGCGCCTTCCCATACCTCCTGGCCTTCACCACCGACTCCATGGAGATCCGCTTGGTGGTGAATGGGAACCTGGTCCACACGGCGGTTGTGCCACAGCTGCAGCTCGTAGCCTCCAGG
Seq C2 exon
TCAGATATATACTTCACAGCAGCCACAACTGTGCATGAGGGCTCATCTGGAGGCAGCTCAAAGGGGGCCAGTGCACACACATCTCCTCAGACACCACCGGCCCGGGACACTCCACTGTTTCCTTCTTCCCTGGGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057044-'48-48,'48-47,49-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.596
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(11.8=100)
A:
PF0078017=CNH=FE(12.7=100)
C2:
PF0078017=CNH=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTGCATCTATAAAAAGGTTTGCC
R:
CCCCAGGGAAGAAGGAAACAG
Band lengths:
242-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]