GgaEX1026103 @ galGal4
Exon Skipping
Gene
ENSGALG00000000847 | GARNL3
Description
GTPase-activating Rap/Ran-GAP domain-like protein 3 [Source:RefSeq peptide;Acc:NP_001025847]
Coordinates
chr17:10439173-10440633:+
Coord C1 exon
chr17:10439173-10439280
Coord A exon
chr17:10439954-10440072
Coord C2 exon
chr17:10440498-10440633
Length
119 bp
Sequences
Splice sites
3' ss Seq
AATTTTCTGTTTCATTGCAGTCT
3' ss Score
8.51
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
ATGTTTGCCAGTATAGAAAGGTGTATCCTTTTAATGGAGGTTCTCCACTGATCCAGCCATCAGCTTATGATTTTCACTTTAGCTGGAATCAAGTTCCTTATGCTGTTG
Seq A exon
TCTGTGCTTTCCCTTATATACTTGCCTTCACTACTGATTCCATTGAGATCCGTTTAGTGGTGAATGGAAACTTAGTCCACACAGCAGTTGTGCCTGAGCTTCAACTTGTCGCATCAAGG
Seq C2 exon
TCGGATATTTATTTTAAAGCTACTGCTGCAGTAAGTGGATCATCTCATAGCAGTTCTAAGGAAATGAGTTCAAGGAGTTCACCTCAAACACCTACAGCTTATGACATGCTGGAATGTTCTCTTTCTTCTTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847-'44-50,'44-49,45-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.315
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(11.9=100)
A:
PF0078017=CNH=FE(12.9=100)
C2:
PF0078017=CNH=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTGCCAGTATAGAAAGGTGT
R:
TTCTGAAGAAGAAAGAGAACATTCCA
Band lengths:
242-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]