MmuEX6100687 @ mm9
Exon Skipping
Gene
ENSMUSG00000038860 | Garnl3
Description
GTPase activating RANGAP domain-like 3 [Source:MGI Symbol;Acc:MGI:2139309]
Coordinates
chr2:32847643-32853283:-
Coord C1 exon
chr2:32853176-32853283
Coord A exon
chr2:32850567-32850685
Coord C2 exon
chr2:32847643-32847781
Length
119 bp
Sequences
Splice sites
3' ss Seq
GCCCATCTGTTCCCTTGCAGTCT
3' ss Score
10.18
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
ATAGTTGCATCTATAAAAAGGTTTGCCCCTTTAACGGTGGCTCTTTTTTGCTTCAACCCTCGGCATCGGATTTCCAGTTCTGTTGGAACCAGGCTCCATATGCAATTG
Seq A exon
TCTGCGCCTTCCCATACCTCCTGGCCTTTACTACCGACTCCATGGAGATCCGCCTGGTGGTGAATGGGAACCTGGTCCACACGGCAGTTGTGCCACAGCTGCAGCTCGTGGCCTCCAGG
Seq C2 exon
TCAGATATATACTTCACAGCAGCCACGACTGTGCATGAAGGCTCATCTGGAGGCAGCTCAAAGGGAGCCAGTGCCCACACGTCTCCTCAGACACCACCAGCCCGGGACACTCCACTGTTTCCTTCTTCCCTGGGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038860-'46-42,'46-41,47-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.596
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(11.8=100)
A:
PF0078017=CNH=FE(12.7=100)
C2:
PF0078017=CNH=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTTGCATCTATAAAAAGGTTTGCC
R:
CCCCAGGGAAGAAGGAAACAG
Band lengths:
242-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: