DreEX6011855 @ danRer10
Exon Skipping
Gene
ENSDARG00000060631 | garnl3
Description
GTPase activating Rap/RanGAP domain-like 3 (garnl3), mRNA [Source:RefSeq mRNA;Acc:NM_001128527]
Coordinates
chr5:32767733-32769574:-
Coord C1 exon
chr5:32769467-32769574
Coord A exon
chr5:32769223-32769341
Coord C2 exon
chr5:32767733-32767868
Length
119 bp
Sequences
Splice sites
3' ss Seq
TGTCACTTCTTGTGTTACAGTGT
3' ss Score
8.85
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
ATATCTGCGTCTATAAGAAGGTGTGTCCGTTTAATGGAGCCACACCCATGATTCAGCCCAACACTTCAGACTTTCATTTTAGCTGGAACCAAATGCCTAATGCTACTG
Seq A exon
TGTGTGCATTCCCATATATACTCGCATTCACCACAGACTCCATAGAGATCCGGCTAGTCGTTAATGGAAACCTAGTTTATACAGCTGTTGTTCCAGAATTGCAGTTGACTGCATCAAGA
Seq C2 exon
TCTGATATCTATTTCATCTCCTCAGCGCCTATAAACTCTGCCTCTAACTGTAGCTCCAGAGACACTAGTTCCCAGAGTTCCCCTCAGACACCCACCGGCTATGAGATGCCTGTCTTCCCTTCACCGCTTGGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060631-'27-32,'27-31,28-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.533
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(11.7=100)
A:
PF0078017=CNH=FE(12.7=100)
C2:
PF0078017=CNH=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGCGTCTATAAGAAGGTGTGT
R:
CATCTCCAAGCGGTGAAGGGA
Band lengths:
242-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]