HsaEX0027046 @ hg38
Exon Skipping
Gene
ENSG00000136895 | GARNL3
Description
GTPase activating Rap/RanGAP domain like 3 [Source:HGNC Symbol;Acc:HGNC:25425]
Coordinates
chr9:127345403-127353944:+
Coord C1 exon
chr9:127345403-127345477
Coord A exon
chr9:127348924-127349035
Coord C2 exon
chr9:127353846-127353944
Length
112 bp
Sequences
Splice sites
3' ss Seq
ATGCTTGTATTGCCTCACAGCCG
3' ss Score
7.51
5' ss Seq
ATGGTTAGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GCACTAAAACTGAAATCCATTGTGAGAGGGGATGCTCCATCAAGCTTGGCAGCTTCAGGGATCTGTAAAAAAGAG
Seq A exon
CCGTGGGAGCCCCAGTGTTTCTGCAGTAATTTCCCTCATGAAGCCGTGTGTGCAGATCCCTGGGGCCAGGCCTTGCTGGTTTCCACTGATGCTGGCGTCTTGCTAGTGGATG
Seq C2 exon
ATGACCTTCCATCAGTGCCCGTGTTTGACAGAACTCTGCCAGTGAAGCAAATGCATGTGCTTGAGACCCTGGACCTTCTGGTTCTCAGAGCAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136895_MULTIEX3-3/5=2-4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078017=CNH=PU(7.2=57.9)
C2:
PF0078017=CNH=FE(10.8=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAACTGAAATCCATTGTGAGAGGG
R:
CTTTGTCTGCTCTGAGAACCAG
Band lengths:
170-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development