BtaEX0015386 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006948 | GARNL3
Description
GTPase activating Rap/RanGAP domain-like 3 [Source:HGNC Symbol;Acc:HGNC:25425]
Coordinates
chr11:98111511-98123080:+
Coord C1 exon
chr11:98111511-98111585
Coord A exon
chr11:98114101-98114212
Coord C2 exon
chr11:98122982-98123080
Length
112 bp
Sequences
Splice sites
3' ss Seq
ACGCTTGTGTTGCCCCGCAGCCT
3' ss Score
9.13
5' ss Seq
ATGGTTAGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GCACTAAAGCTGAAATCCATCGTGAGAGGGGATGCTCCATCAAGCTTGGTGGCATCAGGGATCTGTAAAAAGGAG
Seq A exon
CCTTGGGAGCCACAGTGTTTCTGCAGTAACTTCCCTCATGAGGCCGTGTGTGCGGATCCCTGGGGCCAGGCCTTGCTGGTTTCCACTGATGCCGGCGTCTTGCTAGTGGATG
Seq C2 exon
ACGACCTCCCATCAGTGCCCGTGTTTGACAAGACTCTGCCCGTGAAGCAGATGCATGTGCTGGAGGCGCTGGACCTTCTGATCCTCAGAGCAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006948_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078017=CNH=PU(7.2=57.9)
C2:
PF0078017=CNH=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTAAAGCTGAAATCCATCGTG
R:
CTTTGTCTGCTCTGAGGATCA
Band lengths:
174-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development