RnoEX0037755 @ rn6
Exon Skipping
Gene
ENSRNOG00000057044 | Garnl3
Description
GTPase activating Rap/RanGAP domain-like 3 [Source:RGD Symbol;Acc:1564019]
Coordinates
chr3:12058563-12067094:-
Coord C1 exon
chr3:12067016-12067094
Coord A exon
chr3:12063209-12063320
Coord C2 exon
chr3:12058563-12058661
Length
112 bp
Sequences
Splice sites
3' ss Seq
ATGCTTGTGTTGCCTCACAGCCT
3' ss Score
8
5' ss Seq
ATGGTTAGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
CAGGCCCCTGAAGCTCAAGTCCATTGTGAGAGGGGATGCCCCATCAAGCTTGGCAGCATCAGGAATATGTAAAAAGGAG
Seq A exon
CCTTGGGAGCCCCAATGTTTCTGCTGTAATTTCCCTCACGAAGCTGTGTGTGCAGATCCCTGGGGCCAGGCCTTGCTGGTTTCCACTGATGCCGGCGTCTTGCTAGTGGATG
Seq C2 exon
ATGACCTCCCATCCGTGCCCGTGTTTGACAGAACTCTACCCGTGAAGCAGATCCACGTGCTTGAGACTCTGGACCTTCTGGTTCTCAGAGCAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057044-'35-35,'35-32,37-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078017=CNH=PU(7.2=57.9)
C2:
PF0078017=CNH=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCCCCTGAAGCTCAAGTC
R:
CTTTGTCTGCTCTGAGAACCAG
Band lengths:
178-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]