MmuEX0020085 @ mm10
Exon Skipping
Gene
ENSMUSG00000038860 | Garnl3
Description
GTPase activating RANGAP domain-like 3 [Source:MGI Symbol;Acc:MGI:2139309]
Coordinates
chr2:33007249-33015260:-
Coord C1 exon
chr2:33015186-33015260
Coord A exon
chr2:33011400-33011511
Coord C2 exon
chr2:33007249-33007347
Length
112 bp
Sequences
Splice sites
3' ss Seq
ATGCTTGTGTTCCCTCACAGCCT
3' ss Score
8.8
5' ss Seq
ACGGTCAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GCCCTGAAGCTCAAGTCCATTGTGAGAGGGGACGCCCCATCAAGCTTGGCAGCATCAGGGATGTGTAAAAAAGAG
Seq A exon
CCTTGGGAGCCCCAGTGTTTCTGCTGTAATTTCCCTCATGAAGCCGTGTGTGCAGATCCCTGGGGCCAGGCCTTGCTGGTTTCCACGGATGCTGGCGTCTTGCTAGTGGACG
Seq C2 exon
ATGACCTCCCATCCGTGCCCGTGTTTGACAGAACTCTACCTGTGAAGCAGATCCACGTGCTGGAGACCCTGGACCTTCTGGTTCTCAGAGCAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038860-'41-46,'41-38,44-46
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078017=CNH=PU(7.2=57.9)
C2:
PF0078017=CNH=FE(10.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGAAGCTCAAGTCCATT
R:
CTTTGTCTGCTCTGAGAACCAG
Band lengths:
174-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types