GgaEX0000847 @ galGal3
Exon Skipping
Gene
ENSGALG00000000847 | GARNL3
Description
NA
Coordinates
chr17:11161438-11163418:+
Coord C1 exon
chr17:11161438-11161512
Coord A exon
chr17:11162478-11162589
Coord C2 exon
chr17:11163320-11163418
Length
112 bp
Sequences
Splice sites
3' ss Seq
TCCCTTATGTTAATTCGTAGCCT
3' ss Score
6.59
5' ss Seq
ATGGTTAGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GCACTCAAACTGAAAACTGGTGTGAAAGGGGATGCACCAACTACCTTGGCAACTACAAGCTTTTGTAAAAAGGAG
Seq A exon
CCTTGGGAGTCCCAGTCTTTCTGCAGTAATTTTCCTCATGAGGTTGTCTGTGCAGATTCTTGGGGCCAGTCCTTGCTGGTTTCTACAGATGCTGGCATCTTGTTAATAGATG
Seq C2 exon
ATGGTCAAACCACTGTTCAAGTATTTGATAAAACTCTGCAAATAAAGCAGATGCATGTGTTGGAAGCTCTGGATTATTTGATTGCCCGAACAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078017=CNH=PU(7.3=57.9)
C2:
PF0078017=CNH=FE(10.9=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTCAAACTGAAAACTGGTGT
R:
CTTTGTCTGTTCGGGCAATCA
Band lengths:
174-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]