DreEX6011849 @ danRer10
Exon Skipping
Gene
ENSDARG00000060631 | garnl3
Description
GTPase activating Rap/RanGAP domain-like 3 (garnl3), mRNA [Source:RefSeq mRNA;Acc:NM_001128527]
Coordinates
chr5:32778361-32781836:-
Coord C1 exon
chr5:32781762-32781836
Coord A exon
chr5:32781566-32781680
Coord C2 exon
chr5:32778361-32778465
Length
115 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTACCATCTTTTCAGCCA
3' ss Score
7.35
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
GCCTTAAAGCTAAAAACTATAGTTCGAGGTGATGCGCCCACCAGTCTAGTCACCACTGGCCTTTGCAGGAAAGAG
Seq A exon
CCATGGGAGTCACAGTCGTTCTGCAGCAGCTTCCCTTATGATATAGTCTGTGGAGACTCATGGGGTCAGTCATTACTGGTCGCCACAGATTCAGCAGGAGTCATGCTGCTGGAGG
Seq C2 exon
ATTCACCAACCCTGCCTCCGGTGCAGGTATTTGACAAAACCTTGACCGTCAAACAAATGCACGTGCTTGAACCTCAGGACCTCCTCATTGCAAGAGCAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060631-'19-22,'19-20,20-22=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078017=CNH=PU(7.5=59.0)
C2:
PF0078017=CNH=FE(11.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAAACTATAGTTCGAGGTGATGCG
R:
GCTCTTGCAATGAGGAGGTCC
Band lengths:
162-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]