HsaALTD0002717-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000136895 | GARNL3
Description
GTPase activating Rap/RanGAP domain-like 3 [Source:HGNC Symbol;Acc:25425]
Coordinates
chr9:130005386-130027300:+
Coord C1 exon
chr9:130005386-130005528
Coord A exon
chr9:130005529-130005532
Coord C2 exon
chr9:130027231-130027300
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
3' ss Seq
ATGAAGCATTTTTGTTCCAGCTC
3' ss Score
4.98
Exon sequences
Seq C1 exon
ATGGACCCGTTAACGAAGGTGCCTTGTGGGAGTCAGATAGCACAAACCATTCTATGGAAAGCAAAGTCGTCTCTCTCCTTCGGCATCCAGCCCCTTCAGACATGGCCAACGAAAGACCCTGAACTAGAGTCCCAGGTCAACCT
Seq A exon
GTAA
Seq C2 exon
CTCTGTCTCGGAAGACCTAGGCTGTAGACGTGGGGATTTCAGTAGGAAACATTATGGATCTGTGGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136895-6-17,7-17-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTCTCCTTCGGCATCCAG
R:
CCACGTCTACAGCCTAGGTCT
Band lengths:
107-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)