RnoALTD0012212-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000057044 | Garnl3
Description
GTPase activating Rap/RanGAP domain-like 3 [Source:RGD Symbol;Acc:1564019]
Coordinates
chr3:12115159-12155126:-
Coord C1 exon
chr3:12154956-12155126
Coord A exon
chr3:12154952-12154955
Coord C2 exon
chr3:12115159-12115233
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
3' ss Seq
GAATGTTCTTTTCCTCCTAGCTC
3' ss Score
6.74
Exon sequences
Seq C1 exon
CACAGCACCTCAGCCTCCAGGCCCACTGATGGATCCACTGACCAAGGGGTCCTGTGGGAGTCAGCTGGCACAAACCCTCCTCTGGAAAGCGAAGTCATCTCTCTCTTTCGGCATCCAGCCCCTTCAGACTTGGCCAACAAAGGATCCTGAACTAGAGTCCCAGGTCAACCT
Seq A exon
GTAA
Seq C2 exon
CTCATCTCTAGTGATGCAGATGGAGCCATCCAAAGAGCAGGAAGATTCCGAGTGGAAAATGGCTCTACAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057044-3-10,4-10-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.320
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCAGACTTGGCCAACAA
R:
TCCACTCGGAATCTTCCTGCT
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]