RnoEX0037766 @ rn6
Exon Skipping
Gene
ENSRNOG00000057044 | Garnl3
Description
GTPase activating Rap/RanGAP domain-like 3 [Source:RGD Symbol;Acc:1564019]
Coordinates
chr3:12115159-12136964:-
Coord C1 exon
chr3:12136894-12136964
Coord A exon
chr3:12129748-12129871
Coord C2 exon
chr3:12115159-12115233
Length
124 bp
Sequences
Splice sites
3' ss Seq
ATACTTTCCCCTCCATCTAGTAC
3' ss Score
7.61
5' ss Seq
ACGGTAACC
5' ss Score
6.62
Exon sequences
Seq C1 exon
CTCTGTGCTCAGAAGACCTAGGCTGTAGACGTGGGGATTTCAGTAGGAAACATTATGGATCTGTGGAGCTG
Seq A exon
TACTTTGTACCTTCTGGTCACCTGAATGCCATCAGCAGGGGTGCAGCCTCCACCAGCTCATTGTAATGTCTTCAGCAGTAGAGCTTTACCAAGGCTGAGGAGAGAAAAACCAACACCTTTGACG
Seq C2 exon
CTCATCTCTAGTGATGCAGATGGAGCCATCCAAAGAGCAGGAAGATTCCGAGTGGAAAATGGCTCTACAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057044_MULTIEX2-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.320
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000082696fB5860
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCTCAGAAGACCTAGGC
R:
TGTAGAGCCATTTTCCACTCGG
Band lengths:
138-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]