MmuINT0057749 @ mm9
Intron Retention
Gene
ENSMUSG00000036813 | Entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:MGI Symbol;Acc:MGI:1919340]
Coordinates
chr2:24940246-24941239:+
Coord C1 exon
chr2:24940246-24940380
Coord A exon
chr2:24940381-24940480
Coord C2 exon
chr2:24940481-24941239
Length
100 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACT
5' ss Score
6.6
3' ss Seq
AAGAGCCATGTGTCTCACAGGCA
3' ss Score
5.06
Exon sequences
Seq C1 exon
GTGGAAGTCAGCTATCCTGGGCAGGAGCGCTGGTTACGGGACTACTGTGCCTCGGGTCTGTACATCCTCGTATTGCTGCTGGAGGGCTACAAATTCAGTGAGGAGACCTGGCCCAACATCCAGTTCCAGAAGCAG
Seq A exon
GTGACTGCCCTAAGAATCTAGGCATGTCTGGATCAGGGTGAGAATGGGATAGGGCCCAGGACAGCCACCCAGCAGCCCTGAAGAGCCATGTGTCTCACAG
Seq C2 exon
GCAGGTGACACAGACATTGGCTGGACACTGGGCTTCATGCTGAACCTGACAGGCATGATTCCAGCTGAGGCACCGACCCACTGGCGGGCTCAGAGCTACAGCATCTGGACGGCTGGAGTAGTATTCGCAGTGCTGACCCTTGTGGCCATTCTTGGGGCAGCTGCCATCCAGATCTTCTGGACCCAGGACTAGGTAGAAACCAAGCTGAAGTAGATCACAGTCAACAATATCTAAAGCAGAAGTGTTGAGTCAACAGTGACAACACAGCTGTTTGTGTTGTCAACCTTGTGATCCACCATCAACTGTTCTTAGGAAAGAAGGCCTTTGGCACACAGGACCTTCTGAGCAGATCCTAGATGCCTGCCCTTATGAACCCCTGACCTTTAAGGACTCCAGTCCATCAATTGGGCCAGGAGGGCCAATTGCTGATAGTACTGACTCCTTTATGCCCTCAGGATAGCACTGGCTATGGGGACTGATGTTGTCCATAGGATAGAAACAGGAGAGGCAGCTGTTGGAATAGTGCCACCTCAGAAGGCTGTGGCCAGCCCAGCAGAGACTCCCTGCTTCCTCACTATATCAGACTAGACCAGACAGTCAGAGTCCAGCTCTGGGGCCAGCCCAGCTTCTTCACACAAGAGCCTGTGGTTGGATTCTCTTTATCATCAATCCCAGAATATAGATCAAGTTGGGAATGAGGGAATCATTTTTGTTTGCTTGTTTGCTTGTTTAATTAAAGCTGGTTTTGTCATGGTATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036813-Entpd8:NM_028093:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PD(1.6=11.1),PF0115012=GDA1_CD39=FE(57.1=100)
A:
NA
C2:
PF0115012=GDA1_CD39=PD(36.4=43.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTGTGCCTCGGGTCTGTA
R:
CCAAGAATGGCCACAAGGGTC
Band lengths:
249-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: