HsaINT0056566 @ hg38
Intron Retention
Gene
ENSG00000188833 | ENTPD8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:HGNC Symbol;Acc:HGNC:24860]
Coordinates
chr9:137434364-137435338:-
Coord C1 exon
chr9:137435204-137435338
Coord A exon
chr9:137435106-137435203
Coord C2 exon
chr9:137434364-137435105
Length
98 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACT
5' ss Score
6.6
3' ss Seq
AGCAGCCGTGTGTCCCGCAGGCG
3' ss Score
8.35
Exon sequences
Seq C1 exon
GTGGAGGCCAGCTACCCTGGGCAGGACCGCTGGCTGCGGGACTACTGTGCCTCAGGCCTGTACATCCTCACCCTCCTGCACGAGGGCTACGGGTTCAGCGAGGAGACCTGGCCCAGCCTCGAGTTCCGAAAGCAG
Seq A exon
GTGACTGCCTCCCCTGGGCGTGGGCGGGGCGTGGGCGTGGGCAGGTCGTGGTCCTGGGGTAGCTGCCCCGCAGCCCTGAGCAGCCGTGTGTCCCGCAG
Seq C2 exon
GCGGGCGGTGTGGACATTGGCTGGACACTGGGCTACATGCTGAACCTGACCGGGATGATCCCGGCCGATGCGCCGGCTCAGTGGCGGGCAGAGAGCTACGGCGTCTGGGTGGCCAAAGTGGTGTTCATGGTGCTGGCCCTGGTGGCGGTGGTGGGGGCTGCCTTGGTCCAGCTCTTCTGGTTGCAGGACTAGTGGGAAGGCGGAGGTGGGCCCCCACAGAGCCCACAGGCAGCTGCGTCCCGGATGCTGGAGGCTTCCTGAGCCCTGAGCGCCGTGGGGCCTTGCTCTGTGGCTCTGCCCACGGTCAGGTGACAGCCACCTCCAGGGCACCGTCAGGGTGGTGCTGGCCACAGAGGCTGCATGACCTCCCCTCCCGGCGTCCCTCCCCCAACCTCCTTCCGCAACTGGGCTTCCAGGGCCGTAGGTGCCTTTCTGCACACAGGCCGCCAGGACTCGTGGTGTCTCCAGGCTGTGTGACTGCAGGGCCACATGCTGCCTGCAAACAGGGCAAGACCACGGAGGCACAGGGGTCCTGCTCCTGATGGGGCCTCAGGAGGGGCGGAGAGGGGTGGAAGGGAGGGAGCTGCCCCACCTGGACCCCCGCTCTCCCTGCTGTTGTCTGAGCAGATGGATGGAGTCCAGGCCTGGGGGCTTCTGCTGGGCCAGCCCGGCCTCCCACACCCACTTGGAGGGTGAGACTGCAGTGGGGGTTGTTTTTATTAAAAGCATCATGGACACAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188833:ENST00000344119:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PD(1.5=11.1),PF0115012=GDA1_CD39=FE(56.4=100)
A:
NA
C2:
PF0115012=GDA1_CD39=PD(37.2=45.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGGGTTCAGCGAGGAGA
R:
CCATGAACACCACTTTGGCCA
Band lengths:
179-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development