BtaINT0056556 @ bosTau6
Intron Retention
Gene
ENSBTAG00000030246 | ENTPD8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:HGNC Symbol;Acc:HGNC:24860]
Coordinates
chr11:105701713-105702610:+
Coord C1 exon
chr11:105701713-105701850
Coord A exon
chr11:105701851-105701947
Coord C2 exon
chr11:105701948-105702610
Length
97 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACA
5' ss Score
5.49
3' ss Seq
GGCTGGGGTGTGGCCCGCAGGCC
3' ss Score
7
Exon sequences
Seq C1 exon
GTGGAGGCGAGCGCGCCCCCGGGCCAGGACCGCTGGCTGCGGGACTACTGTGCCTCGGGCCTATACATCCTCACGCTCCTGGTCGAGGGCTACGGGTTCAGTGAGGAGACCTGGGGAGGCATCGAGTTCCGCCAGCAG
Seq A exon
GTGACAGCTGGGGGCCTGGGGGGCTGGGGAAGGGTGGGCCTCCAGGGCCGAAGCCCCGCGGCCCTGACCTGAGCCCCGGCTGGGGTGTGGCCCGCAG
Seq C2 exon
GCCGGCGGCGCTGACATCGGCTGGACGCTGGGCTACATGCTGAACCTGACCAACCTGATCCCGGCCGAGGCGCCCGCCCAGGGTTGGGCACAGAGCTTCGGCGTCTGGGCGGCCGGGGTCGTCTTCGTGGTGCTGACGCTCGCGGCCACCCTGGGTGCCGTGGCAGTGCAGGTCTTCTGGCTCCAGGACTAGGCCTGCGGCCCCTGCTGCCGCCACCCAGGCCCAGCGCCCTCCCCATCAGGAGCCTTGGCCTTCGTCCTGGGGGCTCCGGCCAGCCACCAGACGGCCCCCTTCTGCCCCCGGGGTCGCCCTGGCTGCGGAGGCTGTGGAGCCCCGACCACCGCCCCTGGCTCCCAGCACCCCAGCCTGTTTCCCGGGACCCTCTGCACAGAAACCAGGCTGTCGGGACCTGAGCGGCACCTGGATTGGTGGCGGCAGACTGACGGGTGTAGGGCCAGCTCTGGCCTGGGGTGGGGGTGCCTGCTGGAGCCAGAGCGGCTGGCTCTTTGGGAGGGGTTGGCCGTGGGCCATGGGGTCTCTGGCAGAGCCGGTGTCCAGCTCCGTGGGGTTCTCCTGAGCAGCCCACCTGCACCCCTGGAAGCCCAGTCAGGCCGAGACAGGTCACGCGTGGGACGCAAATGCCTTTATTAAACCCTCCCCGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030246:ENSBTAT00000016080:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(10.5=100)
A:
NA
C2:
PF0115012=GDA1_CD39=PD(6.3=42.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAGTGAGGAGACCTGGGG
R:
GTCAGCACCACGAAGACGAC
Band lengths:
180-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development