RnoINT0055230 @ rn6
Intron Retention
Gene
ENSRNOG00000009239 | Entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:RGD Symbol;Acc:1561793]
Coordinates
chr3:2298821-2302782:+
Coord C1 exon
chr3:2298821-2298955
Coord A exon
chr3:2298956-2299053
Coord C2 exon
chr3:2299054-2302782
Length
98 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACT
5' ss Score
6.6
3' ss Seq
GAAGAGCCATTGTCTCACAGGCA
3' ss Score
2.97
Exon sequences
Seq C1 exon
GTGGAAGACAGCTACCCTGGGCAGGAGCGCTGGCTACGGGACTACTGTGCCTCAGGCCTATACATCCTCGTGTTGCTGCTGGAGGGCTACAAATTCAGTGAGGAGACCTGGCCCAACATCCAGTTCCAGAAGCAG
Seq A exon
GTGACTGCCCTAAGAACCTTGCATGTCTGGATCAGGGTAAGGATGGGATAGGGCCCAGGACAGCCACCCAGCATCCCTGAAGAGCCATTGTCTCACAG
Seq C2 exon
GCAGGCGGCACGGACATTGGCTGGACACTGGGCTTCATGCTGAACCTGACAGGCATGATCCCAGCTGAGGCGCTGACCCAGTGGCGGGCTCAGAGCTACAGCATCTGGATAGCTGGAGTAGTGTTTGCAGTGCTGACCCTCGTGGCCATTCTTGGGGCAGCTGCAGTCCAGCTCTTCTGGACCCAGGACTAGGTAGAAACAAAGCTGATGGCGATGTCTAAAGCAGAAAAAGTCGATGGTGACAACACGGCTGTTTGTGTTGTCACCACAGGACCTTCTGAGCACATCCTAGACGCCTGCCCTCATGAGCCCCTGACACTTGAGGGCTCCAGTCTGCTGAGCAGGCCAGGAGAGCCACTTGCTGACAGTGCTGACTCCTCTGTGCCCTCAGGGCGGCACTGTCCATGGGGACTGTTAGTTGCCCCAGGGATAGAAACAAGAGAGGCAGCTGTGGGAATAGGGCTACCTCAGAAGGCTGTGTCCAGCCCAGCAGAGACTCCTTGCTTCCCCACTATATCAGACTAGACCTGAGAGTCAGAGTCCAGGCCTGAGGCCAGCCCAGCTTCCTCACAGAGCCCTTATCATCAACCCCAGAACATAGATCAAATCGGGACGAGGGGGATAGTTTTGTTTGTTTGTTTAAATTAAAGCTGGTTTTGTCACGGTATTTATTGCTAGTGCTGTTCTCCTGGCTGGGGTTCAGGTACAGGCAGGGCTTCCACACAGGTGGCAGCTGGGACTACAAAGCACTTGGGGAAAATACCAACACGGCCATCTCGGTGTCCCTCCAGCCATGCTTCGTCCACTGTGGAGACATGTTGGGTACCGTGTCTGCCTACAGAAAAGACTGAGCCCTAGAGAGCAGAGCCCCCACCAGGCCTGAGCAAGCCAGCAGTGTGGAGAAAGGGCAGCCTTCTACCTTCACACAGAACATCCACTGTGTCCCCTTGGCGGAAGTCCAAGTCCTCCGGCCTTTGGGCACGATAGTCGTACTGAGCTACCACTTGGTAGAGGACTGGCCGGCCCCAGGCCCCCTGTAATAGAAGAGTGGGCTGCAGGGGCAGTGCACTCGAGGGGCTTCCCTTCCAACTGCCTGGGCTGCCCACAGCAGGCACCAGTCTCTCCCCTTGGCTCACCCGGCACTGGAGCTGCAAGCCTCTTGGGCTCACTGGCACATTCCTCCATACACTCTGCAGTGAGTCCTCCGTGGAGATGGGGACCCAGGCTCTGTCCTCTCCTCGGGCTTTGTAGCTGCACAGAGGGTCCTGAGGGTGAGCTACAGTGTGCAGGGGGAGTACCTAGTGCCTGGTCTGTCCCTAAAGGAAATTAATTTCTGGGGCTCTCCACTGTTCCCGGCTGGCCTTTACTTCCAGGCTGCCCAGATTCTTAACATAGAGCTAAGGAGGCCTTAGCTTTCGTCCCATCCTGAGTCTGAAAAGTGACTGCTTCAGAGCAAAACAATAATAAAAAGCCTTCTCTCCAGTTCAGAAGAACCCTCGCTTCCTCGTAGCTCAGACCTATCCTTTTCTTCTGTAGCTTAGAGTCCCCATGCACAGCTTTCTGACTTACCTGAACTGCCCCTTCTGGGTCTGCTGAAGGAGAGCTTGAGACAGTAGTGTCCGAAAACTGGACAGGTCAGTTCCTCTGGGGACCTTCAGGGGCACAGTAAAGTGGCACTGCACAGTGACAGTCACCAAGGATTCAGGGTCCTTTGTAGCTGTTCCCTGAGGACAGAAACCGGGCTGCTTAGCCTTTAAAGGCAGGTTTGTTTTTGGACCCAAGGAATCAGAGTAGAGACTGGGCTGAGAGGTCAAGGAGAATCTGAGGAATGGCCTTCCTTGCTTTAAGTGGCTGATGAGGAGAGACTGGAGAGCAGGACAGCTCTTACCTCAGCACTAGAGGAATCTTCAGAGGGGCCCGGGACAGGCCCTCCAGTTGCCAGCAAACTGTCCCATAGGCCAGGGCTCATGTGACCACCTTTTCATAAAGGAGACACTTTGGAGTAGAGGAAGGGCTGGCAAGTAGCTGGCCCCGCCCTAAACTTCCCTTAAGGGACAAGTGACCATGCCCCAGCTCTCCTGAAGAGGCGCTCCCTACCCCTTGTGCTCAGGACCCTCTTACACACGGGTGAGGACGACTGGAGGCCGGCTTGCTCCACCTGGGAGCTCTGCAAAGATAGACAGACAGTAGTTAGAGGGACTGTACAAGTGTGGGTCCTCACTCAGGCCACCTGCAGCCATCATGACACATTTTGTTTAGTTGGTTTTGTTACATATTACACTAAACAAAACTATTTGTGTACACATTGTTCAAAAGTCATTTACGTACAATTTGAACACCTGCCAGGGTTTTTACTATTTAGATTGCCAAGATTCCTTCAGGTACAATAGGGGCTACACCCTTCCACTTAAAAGCATGTTTAACAGGATGTTGAGAGCCTACTCTGTATATGAAGAAGCTACACAAGCCTGTTGTGGATAAGGGTAAAGTATAGACCAGGTAAGATACTTTGCCAAGTTTCAATAGAGTTAACCTTTTCCTTAGAAGTTTGTAACTCACACTTCAGCCTTTACACTCGGGAGGGCTTTGCTCCAAGCATGGCCTCTTGTATTCTGTCTACACAGATCTGTACCATGAATCGAGTAGAATAAATGTGCATAGCCTTCTTCTCTGTTCCCTCCTCTGGAGTCCTCAGCCCACACTTGAGTTGGTAACCTGGTTACTCTCTAGTACTGGTGAGTGCCCTTGCTAAAGGATGCCTTTCCATTGTTTGTGGTTTGGTGGTGTTTCCTAGACATTCCCTGGTGGAGTTTTACCTTTGTTGGATTTGTATAAACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGCCTGAAGGTGGGACCTAGAGTACAGGGGTCTTGAGGTGGTGGATCTGGACTTAAGAGAGAAACTCTCTGAGCTCTGACCTAGCACAGTCAGTGGTTAAAGATATAGTCTGGGAGTTTGGCCAGCAGTCAGCAAGAAGTCATTAGCCAAACTTCTCTGGAAATTCATGGGAGGCCCAGACCATAGGCACACCTTGGGACAGGGCTGAGTCTCCGCAGGTCTAGAGTCCACAGGTTGCCCAGCATCAGTGGTGAGTCAGCAACTTCCTGGGTCTTCTATCAATCCCCAAATCTCAATGCTGGCTTCTCCATTGATCCTGAGAGGCTCAGGATAGAATCTTAGGAAGTCATCCCAGCCTAGGATGCCCTGTGTTAGAGAGGAGGTGGGGACCTTAACCCTCTGTGGGACACTCATGAATGTGGCTTGTGAACTAGTCTTAAAGAAACACTACGGAAATGTACCGTGTGACCCTTATGAAGCTTACAGCCCAGGACAGGAGCTGGCAGATGCAGGTTTAAGTCCCTGGGGATTTTGAGCATAGCTGTGAGGGTATAATTGCTCATAAGGACATTGCACCGTTGGATTGGCATGAACTAAAGACTGGATCAACTGGAACTGACTGTCCTGTGACTTGTAATAAGCCCCTGTCAAACCTCTTCAAAGTGCTCACCACTTGCACATGGGGCTGCCGTAGCGAAGCAAGGGTTCCTGCCTAACTCCTCTTCACAAGGGCTCTGAAGGTTTCCAATGGCCAGGAAGGAAGGCATTGTTTGGTCCTTCTGACCTGTCTTTCCCCAGGCTATCAAGTGATTTGATCACCGAATGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009239:ENSRNOT00000012289:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(10.3=100)
A:
NA
C2:
PF0115012=GDA1_CD39=PD(7.0=46.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTGGAGGGCTACAAATT
R:
CAGATGCTGTAGCTCTGAGCC
Band lengths:
168-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]