MmuALTA0015543-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000062647 | Rpl7a
Description
ribosomal protein L7A [Source:MGI Symbol;Acc:MGI:1353472]
Coordinates
chr2:26766526-26767675:+
Coord C1 exon
chr2:26766526-26766646
Coord A exon
chr2:26767539-26767572
Coord C2 exon
chr2:26767573-26767675
Length
34 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
CAATTGAATGTGTTTTCCAGCTA
3' ss Score
5.4
Exon sequences
Seq C1 exon
CCCAAAGGGAAGAAGGCCAAGGGGAAGAAGGTGGCCCCGGCCCCCGCCGTCGTCAAGAAGCAGGAGGCCAAGAAGGTGGTCAACCCTCTGTTCGAGAAGAGGCCCAAGAACTTCGGCATTG
Seq A exon
CTACTCAGCTGCTTAAGCTTGCCCACAAGTACAG
Seq C2 exon
GCCAGAGACAAAGCAAGAGAAGAAGCAAAGGCTACTGGCCCGTGCTGAGAAGAAAGCTGCTGGCAAAGGCGACGTCCCAACTAAGAGACCACCTGTCCTCCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062647-1-5,1-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.634 A=NA C2=0.688
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0124821=Ribosomal_L7Ae=PU(17.9=35.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCGAGAAGAGGCCCAAGA
R:
TTAGTTGGGACGTCGCCTTTG
Band lengths:
117-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: