GgaALTA1027621-3/4 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000003197 | RPL7A
Description
60S ribosomal protein L7a [Source:UniProtKB/Swiss-Prot;Acc:P32429]
Coordinates
chr17:6866698-6867337:+
Coord C1 exon
chr17:6866698-6866847
Coord A exon
chr17:6867197-6867230
Coord C2 exon
chr17:6867231-6867337
Length
34 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TCAGTTCATTTCACTTCTAGCCA
3' ss Score
6.07
Exon sequences
Seq C1 exon
GACAGGATATCCAGCCCAAGCGTGATCTCACCCGCTTTGTGAAATGGCCCCGCTACATCAGGCTGCAGCGCCAGCGCTCCATTCTGTACAAGCGCTTGAAGGTGCCCCCTGCAATCAACCAGTTCAGTCAGGCTTTGGACCGCCAAACAG
Seq A exon
CCACGCAGCTTCTGAAGCTGGCACACAAATACAG
Seq C2 exon
GCCAGAAACTAAGCAAGAGAAGAAGCAGAGGCTGTTGGCTCGTGCTGAACAGAAAGCTGCAGGAAAGGGAGATACTCCAACTAAGAGACCACCAGTCCTCCGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003197-3-6,3-5,3-4,3-3-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=NA C2=0.729
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0124821=Ribosomal_L7Ae=PU(17.9=35.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTGCAATCAACCAGTTCA
R:
CCCTTTCCTGCAGCTTTCTGT
Band lengths:
114-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]