BtaALTA0025580-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000011559 | RPL7A
Description
Bos taurus ribosomal protein L7a (RPL7A), mRNA. [Source:RefSeq mRNA;Acc:NM_001040520]
Coordinates
chr11:104312514-104313710:+
Coord C1 exon
chr11:104312514-104312634
Coord A exon
NA
Coord C2 exon
chr11:104313570-104313710
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
TCTTTTTTTTTTTTTGTCAGCTA
3' ss Score
7.97
Exon sequences
Seq C1 exon
CCGAAGGGAAAGAAGGCCAAGGGGAAGAAGGTGGCCCCGGCCCCGGCCGTGGTGAAGAAGCAGGAGGCCAAGAAGGTGGTCAACCCCCTGTTCGAGAAGAGGCCCAAGAATTTTGGCATTG
Seq A exon
NA
Seq C2 exon
CTACTCAACTGCTTAAGCTGGCCCACAAGTACAGACCAGAGACAAAGCAAGAGAAGAAGCAGAGGCTGCTGGCCCGAGCTGAGAAGAAAGCCGCGGGCAAAGGCGATGTCCCCACCAAGAGGCCACCTGTCCTTCGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011559-1-8,1-7-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.610 A=NA C2=0.688
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0124821=Ribosomal_L7Ae=PU(17.9=35.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAGAAGGCCAAGGGGAAG
R:
GCCTCTGCTTCTTCTCTTGCT
Band lengths:
181-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development