MmuALTA0015542-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000062647 | Rpl7a
Description
ribosomal protein L7A [Source:MGI Symbol;Acc:MGI:1353472]
Coordinates
chr2:26766526-26767091:+
Coord C1 exon
chr2:26766526-26766646
Coord A exon
chr2:26766922-26766946
Coord C2 exon
chr2:26766947-26767091
Length
25 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
AGGAGAGGCCTCGGTCACAGTGT
3' ss Score
-2.4
Exon sequences
Seq C1 exon
CCCAAAGGGAAGAAGGCCAAGGGGAAGAAGGTGGCCCCGGCCCCCGCCGTCGTCAAGAAGCAGGAGGCCAAGAAGGTGGTCAACCCTCTGTTCGAGAAGAGGCCCAAGAACTTCGGCATTG
Seq A exon
TGTCCCTCTTAACTTCCCAGGACAG
Seq C2 exon
GACATCCAGCCCAAAAGAGATTTAACGCGCTTCGTCAAATGGCCCCGCTACATCAGACTGCAGCGGCAAAGAGCTATCCTCTACAAGCGGCTCAAAGTCCCTCCTGCCATTAACCAGTTCACCCAGGCCCTGGACAGGCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062647-1-3,1-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.634 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCGAGAAGAGGCCCAAGA
R:
GAGGATAGCTCTTTGCCGCTG
Band lengths:
114-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: