MmuINT0024150 @ mm9
Intron Retention
Gene
ENSMUSG00000026987 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:MGI Symbol;Acc:MGI:2442782]
Coordinates
chr2:59761598-59762972:-
Coord C1 exon
chr2:59762718-59762972
Coord A exon
chr2:59761813-59762717
Coord C2 exon
chr2:59761598-59761812
Length
905 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
AAAAATGCCAAATTTCATAGGCA
3' ss Score
4.17
Exon sequences
Seq C1 exon
CCCTTGCCAGAGTGGCCTCGCATCCCGGGACTTGTGCTCTCTGGAACCACATTTTCAGACTGTCTCATGGTGGTGCAGTTCTTACGAAACTTTGGTAAAGTTTTGGGCTTTGATGTGAATATTGATGTTCCAAACCTCAGTGTTCTTCAAGAGGGATTGCTAAATATAGGGGACAGCATGGGTGAAGTACAAGACTTGCTTGTGAGGCTCCTCTCAGCTGCTGTATGTGATCCAGGTCTAATTACAGGATACAAG
Seq A exon
GTAAAAACTCCAAACTATAACCAACTGTTTTAAGTGTGTACTCTACATGCGTTTCTAGTTAACTTTCATGGTAGCAGAAGAGTGTGTTGATTTCTCTCTATCTCATTGCTTCCCTATATATATGTCTTGGAATTAATGGAATTATTTATAATAGGTTGCAATTAGCAAATGTAGAAGAATCTTGCTAGACCTTAAGAATATGAACCAGACCGTCTCTCAGTTACTCTCTATTGTTCTAGCTATAGGCAAAGTCCCAGTCAACTTAAGGAAATCGTCCAGTGATGTATGTCAAAAACAGAATTCATATTTATGAAGGACTTAGAACTTGCATGCTTATTCTAAGTTTTCCTTTGTCAGTTGCTATGAACAATAGGCTGAATCATCAGTTAAGGTGCTGACTCTATAGTGGTCATAGGCACTCCCTGTTCCCAGTCATTTGTTCTGCTCACATGCACACTCCAGGGAGTTTGGCTTTAGATAGGACGGTAAAAGGATAAGCTTCCAGATGCAGTGGTCTCCCCGTATGCCTATGTGTTGGTCTTACCTATAAAACATGTGCCATACATAAAGGGGTAAAATAGTCACCATGCCTTTGATCAGCCTTACTCTGCCAGGAGTTAGAAAACAGCTTTGGAGATAAAGAATGCTTGATTGACTTGATTGTCATCTGTTTGCTGCCTAGGTTCAGGTTCTTCTCTGTACATGAATTAAGTAAGAGCTTAACAAGGGCACAGAACAGAATGAACACTCAAATATTTATCTATCATTTTATCTGTTTTTATCTCCACTCCAAATCTGTGATAAAGTCCTATCAATAACATCTAGAGTGTATAAACTAATATTTTAACATTATTTTTTTCACGAATGACTATGGTAAACACTGATAAAAATGCCAAATTTCATAG
Seq C2 exon
GCAAAAACAGCTCTGGGAGAACATTTGCTGAACGTTGGTGTGAATCGAGACAATGTGTCCGAGGTTTTGCAGATTTTCATGGAGGCCCACTGTGGGCAGACTGAGCTGACTGAGAGCCTGAAGACTAAAGCTTTCCAGGCTCACACTCCAGCACAGAAAGCGTCCATCCTGGCCTTCCTCGTTAACGAGCTGGCATGCAGCAAGAGTGTGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026987-Baz2b:NM_001001182:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.042
Domain overlap (PFAM):
C1:
PF0279112=DDT=WD(100=74.1)
A:
NA
C2:
PF0334410=Daxx=PU(1.0=5.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGTCTCATGGTGGTGCAG
R:
TTTCTGTGCTGGAGTGTGAGC
Band lengths:
357-1262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: