GgaINT0050417 @ galGal4
Intron Retention
Gene
ENSGALG00000012579 | BAZ2B
Description
bromodomain adjacent to zinc finger domain protein 2B [Source:RefSeq peptide;Acc:NP_990008]
Coordinates
chr7:36076519-36077370:-
Coord C1 exon
chr7:36077116-36077370
Coord A exon
chr7:36076734-36077115
Coord C2 exon
chr7:36076519-36076733
Length
382 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TTGAAACATCCTTCTTTTAGGCT
3' ss Score
8.62
Exon sequences
Seq C1 exon
GCTTTGCCAGAGCTGCCTCGCATCCCAGGCCTTGTTCTGTCTGGAAGCACATTTTCAGATTGTCTCATGATAGTACAGTTCTTGCGTAACTTTGGTAAAGTTCTTGGCTTTGACGTGAATACAGATGTGCCTTCCCTGAGTACTCTTCAAGAAGGTTTGCTGAACATAGGGGACAGCAGAGGAGAAGTACAGGACTTGCTTGTAAAGCTTGTCACTGCAGCTGTTTGTGATCCAGGACTTGTTACAGGATACAAG
Seq A exon
GTAATGGAAAAATAATCCATTATTAAAAAAAAACAAAAACAAAAAACAGCAATCCAACTGAACAAAAAATAACCCAAATCCTAGGCTTACGAATACTTTCTTTGTAGTGTGTGAAATGATCCACTTGTGCTGTGCCTCTTCTTATTTAACTTCTTTATTTAATATTATTATTATCTCTATTCTTAACAACATGTAAAGGAGCAGACCTTCTCTTTTTCTCTCCATTAAAGATTTTCAGTTGCGTAGTCAAAAGAAATATCCTTGCTGATATAAAATAAATAAATCAGCAAATAAAACCACATAACTATTTTATAAACAGTAACGCAGATTGCAGTGAAAATAGCATTTTCAACTGTGATTGATTGAAACATCCTTCTTTTAG
Seq C2 exon
GCTAAAACTATTCTTGGGGAGCACTTACTGAATGTTGGCATCAATCGAGATAACGTGTCTGAGATTTTGCAGATATTTATGGAGGCTCATTGTGGGCAAACTGAGCTTACAGAGAGCTTGAAGACAAAAGCTTTTCAGGCACATACTCCAGCTCAGAAAGCAGCAGTGCTAGCTTTCCTTGTCAATGAGTTAGCTTGCAGCAAAAGTGTAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579:ENSGALT00000020542:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF0279112=DDT=WD(100=74.1)
A:
NA
C2:
PF0334410=Daxx=PU(2.8=15.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCCAGGCCTTGTTCTGTC
R:
AGCTCAGTTTGCCCACAATGA
Band lengths:
342-724
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]