DreINT0036872 @ danRer10
Intron Retention
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11740326-11741303:+
Coord C1 exon
chr6:11740326-11740577
Coord A exon
chr6:11740578-11741079
Coord C2 exon
chr6:11741080-11741303
Length
502 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
TTCGATGTGTCTTCTACCAGGCC
3' ss Score
8.38
Exon sequences
Seq C1 exon
CCGCTTCCGGGGGTTCCTCGTATCCCGGGTCTGGTTCTGCCTGGCAGTGTGTTTTCAGATTGCCTGATGGTGGTGCAGTTCCTGCGGAGCTTTGGGAAGGTGTTGGGCCTGGACTCCTCTGAGTTGCCCACTCTGGGGATCCTGCAGGAGGGGCTGCTCAACCTGGGCAACAGCATGGGCCAGGTGCAGGACCTGCTGGTGAGACTGCTCTCGTCTGCGGTGTCTGACCCAGGACTGCCTCAAGGACACAGG
Seq A exon
GTGAGGAGGACAGGACTAGAGCTCAGTCTACTGGCATTTTCCCTATAATAAGTGTTGTTTCAGGCACTGTTTTACATCCACAATAGACAAGTCTTTCTGTTTAGTAAACATCAGATGTAAATTACATTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATTTATCTATCTATGTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTGAAACTGATGCAGCTTCAGTGAGCATAAGACATCTTTCATGAACAAACAACAAAATATTCCAAACGTTTTATCAGTAGTAATTCAGTCATTAATTTGTAATTATGATCTATTTAAATTTCAATCATTTATTAAAATTAAGATTTGATTCGATGTGTCTTCTACCAG
Seq C2 exon
GCCAAGTCTATCTTGGGTGACCACCTGACCAATGTGGGTCTGAATCGGGACAATGTGTCAGAGGTTCTGCAGCTCTACATGGAGGCTCACTGCTCTCAGACTGATCTAGCGGATCTGACTCTGAGTTTGAGGACCAAAGCCTTCCAGGCCCACACGCCGGCTCAAAAAGCCTCTGTCCTGGCCTTCCTGGTCAATGAGCTCTCGTGCAGTAAAAGCGTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782:ENSDART00000151044:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF0279112=DDT=WD(100=73.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTTTGGGAAGGTGTTGGG
R:
AAGGCCAGGACAGAGGCTTTT
Band lengths:
351-853
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]