GgaINT0050417 @ galGal3
Intron Retention
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38212856-38213707:-
Coord C1 exon
chr7:38213453-38213707
Coord A exon
chr7:38213071-38213452
Coord C2 exon
chr7:38212856-38213070
Length
382 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TTGAAACATCCTTCTTTTAGGCT
3' ss Score
8.62
Exon sequences
Seq C1 exon
GCTTTGCCAGAGCTGCCTCGCATCCCAGGCCTTGTTCTGTCTGGAAGCACATTTTCAGATTGTCTCATGATAGTACAGTTCTTGCGTAACTTTGGTAAAGTTCTTGGCTTTGACGTGAATACAGATGTGCCTTCCCTGAGTACTCTTCAAGAAGGTTTGCTGAACATAGGGGACAGCAGAGGAGAAGTACAGGACTTGCTTGTAAAGCTTGTCACTGCAGCTGTTTGTGATCCAGGACTTGTTACAGGATACAAG
Seq A exon
GTAATGGAAAAATAATCCATTATTAAAAAAAAACAAAAACAAAAAACAGCAATCCAACTGAACAAAAAATAACCCAAATCCTAGGCTTACGAATACTTTCTTTGTAGTGTGTGAAATGATCCACTTGTGCTGTGCCTCTTCTTATTTAACTTCTTTATTTAATATTATTATTATCTCTATTCTTAACAACATGTAAAGGAGCAGACCTTCTCTTTTTCTCTCCATTAAAGATTTTCAGTTGCGTAGTCAAAAGAAATATCCTTGCTGATATAAAATAAATAAATCAGCAAATAAAACCACATAACTATTTTATAAACAGTAACGCAGATTGCAGTGAAAATAGCATTTTCAACTGTGATTGATTGAAACATCCTTCTTTTAG
Seq C2 exon
GCTAAAACTATTCTTGGGGAGCACTTACTGAATGTTGGCATCAATCGAGATAACGTGTCTGAGATTTTGCAGATATTTATGGAGGCTCATTGTGGGCAAACTGAGCTTACAGAGAGCTTGAAGACAAAAGCTTTTCAGGCACATACTCCAGCTCAGAAAGCAGCAGTGCTAGCTTTCCTTGTCAATGAGTTAGCTTGCAGCAAAAGTGTAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579:ENSGALT00000037699:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF0279112=DDT=WD(100=74.1)
A:
NA
C2:
PF0334410=Daxx=PU(1.3=6.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCCAGGCCTTGTTCTGTC
R:
AGCTCAGTTTGCCCACAATGA
Band lengths:
342-724
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]