HsaINT0016832 @ hg19
Intron Retention
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:963]
Coordinates
chr2:160241666-160243118:-
Coord C1 exon
chr2:160242864-160243118
Coord A exon
chr2:160241881-160242863
Coord C2 exon
chr2:160241666-160241880
Length
983 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
AAAATGCCAAACTTTTATAGGCT
3' ss Score
4.12
Exon sequences
Seq C1 exon
CCTTTGCCAGAGTTGCCTCGTATTCCAGGACTTGTTCTCTCTGGAAGTACATTTTCAGACTGTCTCATGGTGGTGCAGTTCTTACGAAACTTTGGTAAAGTTTTGGGCTTTGATGTGAATATTGATGTTCCAAACCTGAGTGTTCTTCAAGAGGGATTGCTAAATATAGGGGACAGCATGGGTGAAGTACAAGACTTGCTTGTGAGGCTCCTCTCAGCTGCTGTATGTGATCCAGGTCTAATAACAGGATACAAG
Seq A exon
GTAAAAAAAAACAAAATATAAAATGTTTTAAATTTGTACTGTCAGTGCATTGGTAGATAGCTTTAGCATATTAGCAGAAGATTATATAGATTGATCTAATTTTTCCACATAATGTCTCACAAAGTTAACTGTAGATTTGTGTCAGGTTACACTTCATACAAAGAAAACCTGGTTATAAAGCTTAAGGAATGTAGACCATTCTCAAGTTATTCTTTTTTCCTCTAGCTGTAGGCAAAGACCAAGGTGATTTAAGGAAATCCTTAAGCGATATTCATCAACAACAGAATTCATAATTCATAAGGCAACTAGAACTTGTATGTGCCTTCTGATATTATACCTTGTTCTCTCTCAATCACTGTGAATAACTGAAGCTAATCAAGGCACCTACAGACCAGCACGTTAAGACCCTGTGCTGCTCAGTGGATCCTCAATAAGTTCATGTTTATCTTAATTCCAAATACAGTATACATTCCAGGGAGCTTTGCTCTAGATAATATTGTGGAGAGAGAACCTCCCAGATGCACCTGTTTTTCTTCTATCTCCCTCAGTGTTTCCCTATTTATTATCCCCAGCCAGTAAAACCTATAACACTTTAAGGGTAGAAAACAATACTGTTTTTTAACCTCCCCACTCTGTCATTCCTGATAAAATATCCAGATGAAACTTGGGGAAAGGTTGGTGTCGCTTTTATAGTCATGGAAGGCTTGATAGGTAATTTAAAACTTCTGCTACCCATGAATTTGCATACTCTTCTCCCTGCCTGACTTGGAACCAAGGATTTGAAGCGGGGAAAGAAAGAAACAAATACTTGAATATTTGTCTGTCTTCTATTGACTATTTTTGTGTCTCTTTCATTAAAAAAAAAGTGAATAAAGCTCTTGTCAGTAGTATCTAAATCAAATAATATGAGGATTTTTAATCTTATTGTTTTTATGGTATAAATGGTTGTGAGTAATACTGATAAAAATGCCAAACTTTTATAG
Seq C2 exon
GCTAAAACAGCTCTTGGAGAACATTTGCTGAATGTTGGTGTGAATCGAGACAATGTTTCCGAGATTTTACAGATATTTATGGAAGCCCACTGTGGACAAACTGAGCTTACTGAAAGTCTGAAGACCAAAGCTTTTCAGGCTCACACTCCAGCACAGAAAGCTTCAGTCCTGGCTTTCCTGATCAATGAACTGGCATGCAGCAAGAGTGTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636-BAZ2B:NM_013450:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.001 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF0279112=DDT=WD(100=74.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGAGTTGCCTCGTATTCC
R:
CAGTTTGTCCACAGTGGGCTT
Band lengths:
353-1336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)