BtaINT0025091 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020654 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:37105806-37107236:+
Coord C1 exon
chr2:37105806-37106060
Coord A exon
chr2:37106061-37107021
Coord C2 exon
chr2:37107022-37107236
Length
961 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
AAAATGCCAAACTTTTGTAGGCC
3' ss Score
4.23
Exon sequences
Seq C1 exon
CCTTTGCCAGAGTTGCCTCGTATTCCAGGACTTGTTCTCTCTGGAAGTACATTTTCAGACTGTCTCATGGTGGTGCAGTTCTTACGAAACTTTGGTAAAGTTTTGGGCTTTGATGTGAATATTGATGTTCCAAACCTGAGTGTTCTTCAAGAGGGATTGCTAAATATAGGGGACAGCATGGGTGAAGTACAAGACTTGCTTGTGAGGCTCCTCTCAGCTGCTGTATGTGATCCAGGTCTAATTACAGGATACAAG
Seq A exon
GTAAAAAAAAACAAAATACATCTTTTTAATTTGTACTATCAGTGCATTAATAGCTGGCTTTAGCGTGTTAGCAGAAGATTGTATAGACTTACTCAATTTTTTCTACATAGCTTCTCATGAAGTTAAAGGTAGATTTGCTTCAGTTACAGTTGGTACAAACTTAGAAAAACCTGGTTCATAAAGCCTAAGGAATGTAAATCATTCTCAAATTACTTTTATTTTCCTTTAGCTTTTGGCAAAAGCCAAACTTACTTAAGAAATTCCCAAGTAATATTTAGCAAAACAGAAAATTCAAAATTTGTAAAGAAGTTAGAACTTACGTGTGTCCTCTGAAAGTATACTGTGTTCTCTTTGAAATTGTGAATAACTGAGGCTAATCAAGACCCCTGTAGAACAGCATGTTAAGACTCTATATTGCTATGTGGATACTCAATAAGTTCAAATTTATCTTAATTCCAATTAAGATACACATTTCAGTCAGTTTTACTCTAGATAATATTGTAGAGAGAGAAGTTTCCAGATATACCTGTTACTTTTTCCTCCATCTCCCTATTCATTCAGCATACCAGGCAATAAAATCCATGACACTGTAGAACCAGAAAACACAGTAATAATAGTACTTTTCAACCCCTCCCCCACCACTACTGATGGATATAGCCTGCAAAACCTTCAGATAGTTTCTGTGGTCAAAGAAGGTATGAATTTTTAACCACAAATTTACATACTCTTCTCCACACCTAACTTTTAGCCAAGTTTGAAGAAGGAATGGAAAAATTACAAGTACTTGAAAGCTTGTCTGGTCATCCGTTGACTGTTTTTATCTCCATTTCATCATAAATGTGAATAAAGCCCTTGTCAGTAATATCTAAATCATATGATATCAATATTTAAAAGTCTTACTGTTTATATTTTATGAGTCAGTATCAGTCCTTATACTGATAAAAATGCCAAACTTTTGTAG
Seq C2 exon
GCCAAAACAGCTCTTGGAGAACATTTGCTGAATGTTGGTGTGAATCGAGACAATGTTTCCGAGATTTTGCAGATTTTTATGGAAGCACACTGTGGACAGACTGAACTTACTGAAAGCCTGAAGACTAAAGCTTTTCAGGCTCACACTCCAGCACAGAAAGCCTCAGTTCTGGCTTTCCTGATCAATGAACTGGCATGCAGCAAGAGTGTGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020654:ENSBTAT00000027534:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.014
Domain overlap (PFAM):
C1:
PF0279112=DDT=WD(100=74.1)
A:
NA
C2:
PF0334410=Daxx=PU(0.8=4.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGAGTTGCCTCGTATTCC
R:
GTCTGTCCACAGTGTGCTTCC
Band lengths:
351-1312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]