MmuALTA0004384-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000034903 | Cobll1
Description
Cobl-like 1 [Source:MGI Symbol;Acc:MGI:2442894]
Coordinates
chr2:64989087-65076683:-
Coord C1 exon
chr2:65076420-65076683
Coord A exon
chr2:64989222-64989224
Coord C2 exon
chr2:64989087-64989221
Length
3 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
GAATTTTCTTCTTCTCGTAGCAG
3' ss Score
5.89
Exon sequences
Seq C1 exon
CGCGGCGCCCTCGGGCAGGGACCGACCGGCAGGTGGAAGCGCCCCGGGGAGGCGGGGCCGCCCCTGGCTGCCGTGGGTCGAGGCGGGCTCTTGGCCCGGCCGCTCCCGCCCTGACCCGCCGGCCTCTCCCACCCTAGCAGTGACGCGCCGCCTCCGAGCCCGAGCCCGCGCCGCGGCCAGCAGCGCGATGGACCGCAGCGTCCCGGATCCCCTACCCCGCAGCGCGCCCCGCACCCCCGCCATGCAGCCCGCGGGCTCCGCAGG
Seq A exon
CAG
Seq C2 exon
GAAAACAAAAGGGAAGGCGCCTCTTCCTCCGGCCGAGACGAAGGGCACTGATGTCTCTTCTGCTGAAGACCCTGTAGAATCTACTGCTGTCGTCACAGAGCAACAAGACAATATGATAGATAAAGATATTGAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034903-5-12,5-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.580
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0219610=RBD=PU(24.7=28.6)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCCGGATCCCCTACC
R:
GAAGAGGCGCCTTCCCTTTTG
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: