MmuEX6101824 @ mm9
Exon Skipping
Gene
ENSMUSG00000053896 | 4933409G03Rik
Description
RIKEN cDNA 4933409G03 gene [Source:MGI Symbol;Acc:MGI:3045336]
Coordinates
chr2:68430818-68439996:+
Coord C1 exon
chr2:68430818-68430881
Coord A exon
chr2:68431479-68431507
Coord C2 exon
chr2:68439788-68439996
Length
29 bp
Sequences
Splice sites
3' ss Seq
TTTTCCCTATTACCTTTTAGCAT
3' ss Score
8.89
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GACAGTGGTAACTCTAGGGATGAAGAAGAAAACAGCAAAGACATCTCAAAAGGCAGAGTGCTGG
Seq A exon
CATGGATTGAGAAAGATGATTCCTTGAAG
Seq C2 exon
ATTTGTCTGTAGAGGAGGTCATCGAAGTGTCATCGGAAGAAGAACAGAAGGGAGGTGATGAGGAGGAGGATGAGGATAACGACGGTGATGATGAGGATGGTGATGATGGCGATGACGAGGGTGGCGATGACGAGGATGGTGGTGATGAGGACGGTGATGATGGGGATGGAGGTGATGATGAAGGTGTCGCTGGACAAGCACAACTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053896-'6-9,'6-7,7-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAAAAGGCAGAGTGCTGG
R:
CCATCCTCATCATCACCGTCG
Band lengths:
121-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: