GgaEX1002199 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BZ82]
Coordinates
chr1:24079947-24081976:+
Coord C1 exon
chr1:24079947-24080049
Coord A exon
chr1:24081649-24081677
Coord C2 exon
chr1:24081932-24081976
Length
29 bp
Sequences
Splice sites
3' ss Seq
CTTTCATTTTTCACCTCCAGGCT
3' ss Score
11.1
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
ATGGATTCTGAAAGTCTGAGGAAAGCGTCACCTGGTGTGTTGCTCCCAGCTGCAGATGAACACGGAATATGCTTGCAGAATATTTCAGGGGAACACAACAATG
Seq A exon
GCTTTTCAGAGAAACCCAGTAATTTGCAG
Seq C2 exon
ATCTACGGGAGGAATTGAGTTTAGGAGATGTAGACGATATTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104_MULTIEX3-1/6=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGAGGAAAGCGTCACCTG
R:
TCTCCTAAACTCAATTCCTCCCGT
Band lengths:
118-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]