GgaEX1002200 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BZ82]
Coordinates
chr1:24079947-24081976:+
Coord C1 exon
chr1:24079947-24080049
Coord A exon
chr1:24081777-24081843
Coord C2 exon
chr1:24081932-24081976
Length
67 bp
Sequences
Splice sites
3' ss Seq
CACTGGATTGTCTTTCATAGTTG
3' ss Score
6.07
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
ATGGATTCTGAAAGTCTGAGGAAAGCGTCACCTGGTGTGTTGCTCCCAGCTGCAGATGAACACGGAATATGCTTGCAGAATATTTCAGGGGAACACAACAATG
Seq A exon
TTGAAGGTTTCTGCATCACTTTTAGAGATGAATGAAACATCTCCAAAAAAGGAAGGGCAGAAATCAG
Seq C2 exon
ATCTACGGGAGGAATTGAGTTTAGGAGATGTAGACGATATTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104_MULTIEX3-2/6=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATTCTGAAAGTCTGAGGAAAGC
R:
AATATCGTCTACATCTCCTAAACTCA
Band lengths:
143-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]