MmuEX6006484 @ mm10
Exon Skipping
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118539686-118540549:-
Coord C1 exon
chr6:118540451-118540549
Coord A exon
chr6:118539847-118539875
Coord C2 exon
chr6:118539686-118539764
Length
29 bp
Sequences
Splice sites
3' ss Seq
ATTTTCCTTTTGCTTTTCAGAGG
3' ss Score
10.25
5' ss Seq
GAGGTATAG
5' ss Score
7.13
Exon sequences
Seq C1 exon
ATGTGACTTATATACCTTCTTGCATGAGTGGATCAAGAAGCTTTAAAATGGCTAAACTAGAGGAGTCAAGAAATGTAGGCCTTCCGGTAGCCCACATGG
Seq A exon
AGGCCCCCAGGAAATATGCAATCATGGAG
Seq C2 exon
CCTACCATCGAAAGGAGGGCTCCTGTTCTGAACAAAACGGAGACAGTGGGAATGACGGATGCACAGACTTTCAAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827-'16-20,'16-19,18-20=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.676 A=0.900 C2=0.870
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATGAGTGGATCAAGAAGCT
R:
TTGTTCAGAACAGGAGCCCTC
Band lengths:
114-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types