MmuEX0014207 @ mm9
Exon Skipping
Gene
ENSMUSG00000035392 | Dennd1a
Description
DENN/MADD domain containing 1A [Source:MGI Symbol;Acc:MGI:2442794]
Coordinates
chr2:37672436-37700320:-
Coord C1 exon
chr2:37700297-37700320
Coord A exon
chr2:37678069-37678125
Coord C2 exon
chr2:37672436-37672524
Length
57 bp
Sequences
Splice sites
3' ss Seq
AAGTTTCCACTTTAATGCAGCAA
3' ss Score
3.37
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CCAATCACAGTCCACTTTGGGCAG
Seq A exon
CAACAAAGACTTCATCCCACTCGGCCGCCGCCTCCCAAGATCCAGCGCTCAAGGCCC
Seq C2 exon
GTACGGCCTCCTCGTCCACATGTCGTCAGGAGACCCAAGAGCAACATCACTGTGGAAGGCAGGAGGACATCTGTCTCAAGCCCTGAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035392-'39-39,'39-38,41-39
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0345514=dDENN=PD(12.5=75.0)
A:
PF0345514=dDENN=PD(5.7=15.8)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATCACAGTCCACTTTGGGC
R:
CAGGGCTTGAGACAGATGTCC
Band lengths:
108-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: