GgaEX0001252 @ galGal3
Exon Skipping
Gene
ENSGALG00000001157 | DENND1A
Description
NA
Coordinates
chr17:9747093-9765795:-
Coord C1 exon
chr17:9765664-9765795
Coord A exon
chr17:9751624-9751683
Coord C2 exon
chr17:9747093-9747181
Length
60 bp
Sequences
Splice sites
3' ss Seq
AAGTTTCCACTTTGATACAGCAG
3' ss Score
3.16
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GACATAGCTGAGAATGGGTGTTCTGCAGCACCAGAGCAGTCTCTACCAAGACCAGCACCTTCTCCATTGGTTGAAAAGAAGGACACTAAATTAAGAGAGGACAGAAGACCAATCACAGTACATTTTGGTCAG
Seq A exon
CAGCAAAGACTCCGTCCGCCTCGGCCACCGCCTCCAAAGATACAGCGTTCAACTAGGCCC
Seq C2 exon
GTTCGTCCTCCAAGACCTCATATTGTTAAGAGACCCAAGAGCAACATTGCTGTGGAAGCAAGAAGGACTTCCATTTCCAGTCCAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001157_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.941 A=1.000 C2=0.953
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAATGGGTGTTCTGCAGCA
R:
ATGAGGTCTTGGAGGACGAAC
Band lengths:
144-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]