DreEX0003540 @ danRer10
Exon Skipping
Gene
ENSDARG00000014592 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr21:8363490-8369570:+
Coord C1 exon
chr21:8363490-8363606
Coord A exon
chr21:8366392-8366478
Coord C2 exon
chr21:8369500-8369570
Length
87 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGCGTGCGCGCACAGAAT
3' ss Score
6.21
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GAGCTTACAGAGAACGGCTACTCAGAAGAGCCCGGGCCCACTCAGCTTCCCTCCACACAGAGCAAAGACTCCCTCACCTGGGACCAGAGGCGGCCAATCACAGTTCACTTTGGGCAG
Seq A exon
AATGAGCGGTCACCCTCTCCACGGCCCATGCGGCCACAGCGCCCTCCTCCACCCCATCCCTCCAAACTACAGCGCAGCATACGACCA
Seq C2 exon
GCTCGACCTCCTCGGCCATTGGTGGCAAAGAGACCTCGCAGTAACATTGGTGTAGAAGGAAGCCCTGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014592_MULTIEX1-18/18=17-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGGCTACTCAGAAGAGCC
R:
TCAGGGCTTCCTTCTACACCA
Band lengths:
174-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]