RnoEX0027101 @ rn6
Exon Skipping
Gene
ENSRNOG00000010526 | Dennd1a
Description
DENN domain containing 1A [Source:RGD Symbol;Acc:1307927]
Coordinates
chr3:22077835-22106533:-
Coord C1 exon
chr3:22106402-22106533
Coord A exon
chr3:22083652-22083708
Coord C2 exon
chr3:22077835-22077923
Length
57 bp
Sequences
Splice sites
3' ss Seq
AAGTTTCCACTTTAATGCAGCAA
3' ss Score
3.37
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GACATCACCGAGAATGGCTGTGCATCCTCTGCAGAAGATCCACTGCCAAAGACCATACCATCCCCACTGGCAGAGGCCAAGGACCCCAAACTTCGAGAAGACCGGAGACCAATCACAGTCCACTTTGGGCAG
Seq A exon
CAACAAAGACTCCATCCCACTCGGCCGCCGCCTCCCAAGATCCAGCGCTCAAGGCCC
Seq C2 exon
GTAAGACCGCCTCGGCCGCATGTCATCAAGAGACCCAAGAGCAACATGGCTGTGGAAGGCCGGAGGACGTCCATCTCAAGCCCCGAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010526_MULTIEX2-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000091747fB4028
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCATACCATCCCCACTGG
R:
CTTCCACAGCCATGTTGCTCT
Band lengths:
141-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]