BtaEX0011026 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003610 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr11:94547100-94578961:-
Coord C1 exon
chr11:94578830-94578961
Coord A exon
chr11:94553466-94553522
Coord C2 exon
chr11:94547100-94547188
Length
57 bp
Sequences
Splice sites
3' ss Seq
AAGTTTCCACTTTAATGCAGCCA
3' ss Score
3.31
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GACATCACTGAGAATGGCTGTGCCCCCACCACAGAAGAGCAGCTGCCAAAGACTGTGCCGTCCCCACTGGTAGAGGCCAAGGACCCCAAGTTCCGAGAGGACCGGCGGCCAATCACAGTCCACTTTGGACAG
Seq A exon
CCACAGAGACTCCGTCCCACTCGCCCACTGCCTCCCAAGATACAGCGCTCGAGGCCC
Seq C2 exon
GTGCGCCCTCCCCGTCCACACGTCGTTAAAAGACCGAAGAGCAACATCACAGTGGAAGCCCGAAGGACGTCCGTCTCGAGCCCCGACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003610_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.985 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000061512fB2089
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGCAGCTGCCAAAGACT
R:
CGGTCTTTTAACGACGTGTGGA
Band lengths:
135-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development