BtaEX0011027 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003610 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr11:94529998-94578961:-
Coord C1 exon
chr11:94578830-94578961
Coord A exon
chr11:94547100-94547188
Coord C2 exon
chr11:94529998-94530253
Length
89 bp
Sequences
Splice sites
3' ss Seq
TTTCCCCATGCCCATTCTAGGTG
3' ss Score
11.13
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GACATCACTGAGAATGGCTGTGCCCCCACCACAGAAGAGCAGCTGCCAAAGACTGTGCCGTCCCCACTGGTAGAGGCCAAGGACCCCAAGTTCCGAGAGGACCGGCGGCCAATCACAGTCCACTTTGGACAG
Seq A exon
GTGCGCCCTCCCCGTCCACACGTCGTTAAAAGACCGAAGAGCAACATCACAGTGGAAGCCCGAAGGACGTCCGTCTCGAGCCCCGACCA
Seq C2 exon
GCCACAGCCATATCGGACACTCAAGGAGTCAGACAGTGCAGGGGACGAGGCCGAAAGCCCGGAGCAGCGAGCGCGGGAGCCTGTGGGCCCCACCCCAGCTCCACACGACCGGGCCGCCAGCATCAACCTCCTGGAGGATGTCTTCAGCAACCTCGACATGGAAGTCCCGCTGCAGCAGCTGGGCCAGGCCAAAAGCTTGGAAGACCTTCGGACCCCCAAAGACCTGAGGGAGCAGCCGGGGACCTTTGACTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003610_MULTIEX1-2/3=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.985 A=1.000 C2=0.907
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCCAATCACAGTCCACTTT
R:
CATCCTCCAGGAGGTTGATGC
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development