GgaEX0001253 @ galGal4
Exon Skipping
Gene
ENSGALG00000001157 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr17:9025060-9052792:-
Coord C1 exon
chr17:9052661-9052792
Coord A exon
chr17:9034090-9034178
Coord C2 exon
chr17:9025060-9025315
Length
89 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTGTATGTGTAATAGGTT
3' ss Score
8.19
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GACATAGCTGAGAATGGGTGTTCTGCAGCACCAGAGCAGTCTCTACCAAGACCAGCACCTTCTCCATTGGTTGAAAAGAAGGACACTAAATTAAGAGAGGACAGAAGACCAATCACAGTACATTTTGGTCAG
Seq A exon
GTTCGTCCTCCAAGACCTCATATTGTTAAGAGACCCAAGAGCAACATTGCTGTGGAAGCAAGAAGGACTTCCATTTCCAGTCCAGAACA
Seq C2 exon
GCCGCAGCCATACCGGGCTCTGAAAGAATCTGATAGTGCTGATGGAGAAGAGGCTGTCAGTCCAGAAAAGGCAAAAGAGCCTCTGCCTCCAAGCCCTCTTCTCTTGAGCAACGCCACAGAAATCAACCTCCTTGAAGACATTTTCCCTAACTTAGAAGTAGAAACACAGCCTCAGCCTCTCAGCCAGGCTAAAAGCCTGGAAGACCTGCGGACTCCAAAAGAAGAGACAGATCAGCGATGCACGTTTGATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001157-'41-66,'41-62,47-66
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.905 A=1.000 C2=0.898
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000001740fB122
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAATGGGTGTTCTGCAGCA
R:
AGCCTCTTCTCCATCAGCACT
Band lengths:
178-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]