DreEX6083167 @ danRer10
Exon Skipping
Gene
ENSDARG00000014592 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr21:8366392-8371486:+
Coord C1 exon
chr21:8366392-8366478
Coord A exon
chr21:8369500-8369570
Coord C2 exon
chr21:8371358-8371486
Length
71 bp
Sequences
Splice sites
3' ss Seq
ATTTGTGTGTGTGTTTGCAGGCT
3' ss Score
9.71
5' ss Seq
ACAGTAAGA
5' ss Score
5.96
Exon sequences
Seq C1 exon
AATGAGCGGTCACCCTCTCCACGGCCCATGCGGCCACAGCGCCCTCCTCCACCCCATCCCTCCAAACTACAGCGCAGCATACGACCA
Seq A exon
GCTCGACCTCCTCGGCCATTGGTGGCAAAGAGACCTCGCAGTAACATTGGTGTAGAAGGAAGCCCTGAACA
Seq C2 exon
TTACGTGCGTCCAACCCGTCACTATACAGTGTTTCTGTGCGAGGACTCCTCGGGTGATGAGCTGTCTCAGGATGACGACTCCATTGCTGCTTTTCCTGAACACTTCCTGCTTTCTGCTCCTTTTGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014592-'22-26,'22-25,24-26=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.477
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAGCGGTCACCCTCTCC
R:
AGCAGCAATGGAGTCGTCATC
Band lengths:
178-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]