BtaEX0011028 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003610 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr11:94529998-94547188:-
Coord C1 exon
chr11:94547100-94547188
Coord A exon
chr11:94533043-94533171
Coord C2 exon
chr11:94529998-94530253
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTTGTCTCCCTCTGCCCCAGCCT
3' ss Score
7.1
5' ss Seq
ATGGTCTCT
5' ss Score
-5.63
Exon sequences
Seq C1 exon
GTGCGCCCTCCCCGTCCACACGTCGTTAAAAGACCGAAGAGCAACATCACAGTGGAAGCCCGAAGGACGTCCGTCTCGAGCCCCGACCA
Seq A exon
CCTCGTAAGGCCCTTGCGACACTATGCTGTCTTCCTCTCCGAAGACTCCTCTGACGATGAGTGCCAGCGGGAAGAGGGCCCGAGCTCTGGCTTCACCGAAAGCTTTTTCTTCTCCACTCCCTTTGAATG
Seq C2 exon
GCCACAGCCATATCGGACACTCAAGGAGTCAGACAGTGCAGGGGACGAGGCCGAAAGCCCGGAGCAGCGAGCGCGGGAGCCTGTGGGCCCCACCCCAGCTCCACACGACCGGGCCGCCAGCATCAACCTCCTGGAGGATGTCTTCAGCAACCTCGACATGGAAGTCCCGCTGCAGCAGCTGGGCCAGGCCAAAAGCTTGGAAGACCTTCGGACCCCCAAAGACCTGAGGGAGCAGCCGGGGACCTTTGACTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003610_MULTIEX1-3/3=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.455 C2=0.907
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000061512fB2090
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAACATCACAGTGGAAGCC
R:
GGTCTTCCAAGCTTTTGGCCT
Band lengths:
256-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development