GgaEX0001254 @ galGal3
Exon Skipping
Gene
ENSGALG00000001157 | DENND1A
Description
NA
Coordinates
chr17:9738063-9747181:-
Coord C1 exon
chr17:9747093-9747181
Coord A exon
chr17:9739970-9740098
Coord C2 exon
chr17:9738063-9738318
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCCTGTTTCCCTCAGCCT
3' ss Score
8.69
5' ss Seq
ATGGTCTAT
5' ss Score
-4.36
Exon sequences
Seq C1 exon
GTTCGTCCTCCAAGACCTCATATTGTTAAGAGACCCAAGAGCAACATTGCTGTGGAAGCAAGAAGGACTTCCATTTCCAGTCCAGAACA
Seq A exon
CCTTGTAAAGCCTATGCGACACTATACAGTCTTCCTCTCTGAGGACTCTTCTGATGATGAATTTCAGCAGGAAGAGGATCCTGTATCTGGCTTCTCTGAAAACTTTTTCTTCTCTGCTCCTTTTGAATG
Seq C2 exon
GCCGCAGCCATACCGGGCTCTGAAAGAATCTGATAGTGCTGATGGAGAAGAGGCTGTCAGTCCAGAAAAGGCAAAAGAGCCTCTGCCTCCAAGCCCTCTTCTCTTGAGCAACGCCACAGAAATCAACCTCCTTGAAGACATTTTCCCTAACTTAGAAGTAGAAACACAGCCTCAGCCTCTCAGCCAGGCTAAAAGCCTGGAAGACCTGCGGACTCCAAAAGAAGAGACAGATCAGCGATGCACGTTTGATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001157-'32-41,'32-40,34-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.953 A=0.455 C2=0.898
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAAGCAAGAAGGACTTCCA
R:
CGCAGGTCTTCCAGGCTTTTA
Band lengths:
248-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]